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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
110
total RNA-seq
25
ATAC-seq
17
pCHi-C
16
snATAC-seq
2
Capture-C
Assay category
154
DNA binding
110
Transcription
41
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
February, 2023
24
May, 2022
16
January, 2021
4
August, 2021
Available data
222
bigWig
204
bam
134
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
4
bed bed3+
Organism
324
Homo sapiens
Biosample type
239
primary cell
51
in vitro differentiated cells
34
tissue
Organ
33
pancreas
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
213
T1D
111
AMP
Genome assembly (visualization)
242
hg19
180
GRCh38
Lab
3809
AMP-T2D consortium
320
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
324 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
Capture-C
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
adipocyte
1
1
osteoblast
1
1
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
See all biosamples
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