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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
187
single cell RNA-seq
171
total RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
360
Transcription
279
DNA binding
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
27
October, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
273
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
724
Homo sapiens
Biosample type
2173
tissue
724
primary cell
625
cell line
347
in vitro differentiated cells
10
stem cell
Organ
278
epithelium
238
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
376
AMP
196
T1D
151
HPAP
1
ITG
Genome assembly (visualization)
521
hg19
460
GRCh38
Lab
341
AMP-T2D consortium
231
Kyle Gaulton, UCSD
151
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2023
April, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
724 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
85
pancreatic alpha cell
13
12
25
31
1
pancreatic beta cell
13
12
11
16
1
CD8-positive, alpha-beta T cell
33
4
1
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