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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
1
ATAC-seq
1
RRBS
Assay category
15
Transcription
5
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
6
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
29
Homo sapiens
Biosample type
25
tissue
4
primary cell
Organ
837
pancreas
683
liver
635
connective tissue
466
adipose tissue
442
epithelium
323
kidney
290
heart
254
brain
179
vasculature
174
blood vessel
151
bone element
105
limb
97
artery
90
musculature of body
63
blood
63
bodily fluid
32
nerve
30
embryo
29
eye
20
lung
20
vein
18
ureter
17
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
29
AMP-T2D consortium
month_released!
February, 2023
April, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
retina
1
3
primary cell
retinal pigment epithelial cell
2
1
1
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