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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
1
ATAC-seq
Assay category
15
Transcription
5
DNA accessibility
4
DNA binding
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
Available data
6
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
tsv
Organism
28
Homo sapiens
Biosample type
25
tissue
3
primary cell
Organ
784
pancreas
676
liver
628
connective tissue
460
adipose tissue
389
epithelium
319
kidney
280
heart
252
brain
176
vasculature
172
blood vessel
151
bone element
104
limb
97
artery
84
musculature of body
63
blood
63
bodily fluid
32
nerve
30
embryo
28
eye
20
lung
20
vein
18
ureter
15
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
28
AMP-T2D consortium
month_released!
February, 2023
April, 2019
target.investigated_as!
control
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
28 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
ATAC-seq
tissue
islet of Langerhans
14
2
4
1
retina
1
3
primary cell
retinal pigment epithelial cell
2
1
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