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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
421
ATAC-seq
82
snATAC-seq
25
DNase-seq
5
FAIRE-seq
Assay category
1840
DNA binding
1824
Transcription
533
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
June, 2019
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
240
bed narrowPeak
202
bam
153
bigWig
95
fastq
64
xls
60
zippedFastqFolder
54
bigBed narrowPeak
21
bed broadPeak
19
bigBed broadPeak
18
bed bed3+
4
bed bedgraph
2
bed bed3
2
tsv
1
tar
1
txt
Organism
532
Homo sapiens
Biosample type
245
primary cell
226
tissue
31
cell line
31
in vitro differentiated cells
Organ
149
pancreas
90
epithelium
85
kidney
27
liver
18
connective tissue
16
blood vessel
16
vasculature
12
artery
12
heart
12
limb
10
lung
9
blood
9
bodily fluid
8
bone element
8
skeleton
6
adipose tissue
6
brain
3
nerve
3
vein
2
musculature of body
2
spleen
1
eye
1
pituitary gland
1
skin of body
Project
417
AMP
90
HPAP
16
T1D
10
LungMap
Genome assembly (visualization)
244
hg19
212
GRCh38
Lab
286
AMP-T2D consortium
90
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
33
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
February, 2023
August, 2020
June, 2019
BIOSAMPLE
ASSAY
533 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
30
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
21
+ See 36 more…
tissue
kidney
75
6
1
islet of Langerhans
57
5
1
1
liver
20
2
lung
10
body of pancreas
4
2
+ See 26 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
embryonic stem cell
5
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
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