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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
total RNA-seq
78
ChIP-seq
6
ATAC-seq
6
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
416
Transcription
78
DNA binding
12
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
57
August, 2017
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
449
bam
431
bigWig
402
tsv
44
fastq
18
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
519
Homo sapiens
Biosample type
512
tissue
7
primary cell
1
in vitro differentiated cells
Organ
890
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
30
eye
25
spleen
24
embryo
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
520
AMP
Genome assembly (visualization)
432
hg19
430
GRCh38
Lab
520
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2023
February, 2018
BIOSAMPLE
ASSAY
520 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
omental fat pad
5
11
1
2
1
+ See 4 more…
primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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