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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1670
ChIP-seq
1289
total RNA-seq
394
ATAC-seq
366
single cell RNA-seq
211
DNase-seq
87
RNA microarray
82
snATAC-seq
75
WGBS
24
pCHi-C
22
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1289
Transcription
Date released
523
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
89
August, 2017
February, 2023
67
August, 2021
44
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
March, 2020
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1173
tsv
1144
bam
1140
bigWig
146
fastq
55
txt
2
bed bed3+
Organism
1289
Homo sapiens
Biosample type
1009
tissue
171
primary cell
in vitro differentiated cells
109
cell line
Organ
465
connective tissue
398
adipose tissue
350
pancreas
188
liver
88
epithelium
69
heart
60
blood vessel
60
kidney
60
vasculature
58
bone element
56
artery
17
brain
15
eye
8
embryo
7
limb
5
nerve
4
musculature of body
1
pericardium
1
spinal cord
Project
1177
AMP
96
T1D
16
HPAP
Genome assembly (visualization)
1141
hg19
1139
GRCh38
Lab
1089
AMP-T2D consortium
105
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
16
Klaus Kaestner, Upenn
10
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
month_released!
February, 2023
March, 2020
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1289 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
285
liver
166
bone tissue
58
kidney
49
+ See 39 more…
primary cell
monocyte
54
pancreatic alpha cell
25
pancreatic beta cell
11
hepatocyte
5
osteoblast
5
+ See 44 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
31
HepG2
14
H1-hESC
8
RCC 7860 HIF1a re-expression
1
+ See 3 more…
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