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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
13
ATAC-seq
5
pCHi-C
5
total RNA-seq
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
52
DNA binding
13
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
47
May, 2021
February, 2023
14
August, 2017
6
March, 2020
5
August, 2021
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
bam
256
bigWig
141
fastq
131
tsv
130
bed narrowPeak
40
tagAlign
21
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
87
Homo sapiens
Biosample type
767
tissue
391
primary cell
87
in vitro differentiated cells
74
cell line
7
stem cell
Organ
25
connective tissue
1
adipose tissue
1
embryo
Project
87
AMP
Genome assembly (visualization)
21
hg19
4
hg18
Lab
47
Kyle Gaulton, UCSD
36
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
2
audit script error
month_released!
February, 2023
October, 2017
files.file_type!
bam
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
1
5
adipocyte
14
7
1
cardiomyocytes (cardiac muscle cell)
2
2
2
lymphocyte of B lineage (iPSC)
1
1
osteoblast
1
1
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