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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
91
ATAC-seq
90
total RNA-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
FAIRE-seq
1
RNA microarray
Assay category
160
Transcription
111
DNA accessibility
107
DNA binding
53
DNA methylation
8
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
26
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
80
May, 2022
61
September, 2018
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
21
May, 2021
20
June, 2019
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
293
bam
281
bigWig
201
fastq
152
tsv
121
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
448
Homo sapiens
Biosample type
369
primary cell
78
cell line
in vitro differentiated cells
1
tissue
Organ
887
pancreas
776
liver
586
connective tissue
489
adipose tissue
448
epithelium
356
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
329
AMP
115
HPAP
4
T1D
Genome assembly (visualization)
279
hg19
274
GRCh38
Lab
327
AMP-T2D consortium
115
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
86
inconsistent ontology term
5
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
February, 2023
organ_slims!
bone marrow
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
448 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
13
35
25
12
31
1
pancreatic beta cell
13
23
11
12
16
1
pancreatic acinar cell
8
9
4
12
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
+ See 19 more…
cell line
EndoC_BH1
15
19
33
1
6
2
glomerular visceral epithelial cell
1
1
tissue
renal glomerulus
1
See all biosamples
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