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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
26
bam
10
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
36
Homo sapiens
Biosample type
28
tissue
6
primary cell
2
cell line
Organ
232
pancreas
225
kidney
173
epithelium
166
liver
129
heart
122
brain
91
connective tissue
85
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
limb
23
eye
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
hg19
152
GRCh38
Lab
36
AMP-T2D consortium
month_released!
February, 2023
assembly!
hg19
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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