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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
79
tissue
6
primary cell
Organ
803
pancreas
788
liver
654
connective tissue
488
adipose tissue
377
epithelium
348
heart
331
kidney
282
brain
198
vasculature
193
blood vessel
121
limb
106
artery
85
musculature of body
69
blood
69
bodily fluid
67
bone element
43
nerve
31
embryo
30
eye
25
spleen
21
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
85
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
month_released!
February, 2023
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
85 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
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