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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
6
total RNA-seq
3
ChIP-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
9
Transcription
6
3D chromatin structure
3
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
3
control
Date released
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
57
bam
55
bigWig
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
23
Homo sapiens
Biosample type
18
tissue
5
primary cell
Organ
537
pancreas
517
connective tissue
424
adipose tissue
321
epithelium
314
liver
201
heart
171
kidney
143
bone element
103
vasculature
101
blood vessel
82
brain
67
artery
30
limb
24
eye
23
embryo
23
musculature of body
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
11
hg19
7
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2023
August, 2017
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
23 results
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Hi-C
total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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