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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ATAC-seq
9
snATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
437
Transcription
218
DNA binding
160
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
160
Homo sapiens
Biosample type
71
primary cell
69
tissue
20
cell line
Organ
163
kidney
160
pancreas
111
epithelium
44
limb
42
heart
36
brain
35
musculature of body
29
liver
24
connective tissue
23
vasculature
21
blood vessel
18
ureter
14
artery
10
lung
9
blood
9
bodily fluid
8
bone element
8
skeleton
7
adipose tissue
5
eye
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
103
AMP
49
HPAP
8
T1D
Genome assembly (visualization)
79
hg19
67
GRCh38
Lab
80
AMP-T2D consortium
49
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
month_released!
February, 2023
BIOSAMPLE
ASSAY
160 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
47
5
1
1
body of pancreas
4
4
pancreas
4
2
1
cell line
EndoC_BH1
19
Panc1
1
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