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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
total RNA-seq
218
ChIP-seq
141
ATAC-seq
80
single cell RNA-seq
51
WGBS
10
MeRIP-seq
9
Hi-C
9
snATAC-seq
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
141
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
65
bam
64
bed narrowPeak
56
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
141
Homo sapiens
Biosample type
71
primary cell
51
tissue
19
cell line
Organ
141
pancreas
91
epithelium
75
kidney
23
liver
15
connective tissue
12
heart
11
blood vessel
11
vasculature
10
artery
8
bone element
8
limb
8
skeleton
adipose tissue
3
brain
1
blood
1
bodily fluid
1
eye
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
92
AMP
49
HPAP
Genome assembly (visualization)
71
hg19
59
GRCh38
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
month_released!
February, 2023
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
47
body of pancreas
4
cell line
EndoC_BH1
19
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