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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
58
total RNA-seq
17
ChIP-seq
8
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
58
Transcription
17
DNA binding
11
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
150
February, 2021
21
October, 2019
February, 2023
1
March, 2020
1
May, 2021
Available data
86
bam
84
txt
73
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
173
Homo sapiens
Biosample type
150
tissue
23
primary cell
Organ
890
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
354
kidney
317
heart
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
172
AMP
1
T1D
Genome assembly (visualization)
83
hg19
78
GRCh38
Lab
172
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
February, 2023
BIOSAMPLE
ASSAY
173 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
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