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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
9
DNase-seq
Assay category
477
Transcription
109
DNA binding
24
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
February, 2023
6
June, 2019
5
February, 2021
3
October, 2019
2
August, 2017
2
August, 2021
2
November, 2020
1
January, 2018
1
November, 2018
1
November, 2019
1
October, 2017
Available data
18
bigWig
16
bed narrowPeak
14
bam
13
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
bed bedgraph
4
fastq
1
bed bed3
Organism
24
Homo sapiens
Biosample type
9
in vitro differentiated cells
8
primary cell
7
tissue
Organ
163
kidney
160
pancreas
111
epithelium
44
limb
42
heart
36
brain
35
musculature of body
29
liver
24
connective tissue
23
vasculature
21
blood vessel
18
ureter
14
artery
10
lung
9
blood
9
bodily fluid
8
bone element
8
skeleton
7
adipose tissue
5
eye
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
24
AMP
Genome assembly (visualization)
23
hg19
14
GRCh38
Lab
22
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
24 results
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ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
7
1
osteoblast
1
primary cell
cardiac fibroblast
3
osteoblast
2
1
brain pericyte
1
hepatic stellate cell
1
tissue
omental fat pad
1
2
adipose tissue
2
adipose tissue(adipose white tissue)
1
subcutaneous adipose tissue
1
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