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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
44
ChIP-seq
17
pCHi-C
16
snATAC-seq
Assay category
100
Transcription
44
DNA binding
16
DNA accessibility
Target of assay
88
histone
88
histone modification
broad histone mark
44
narrow histone mark
Date released
109
May, 2021
45
May, 2020
February, 2023
16
January, 2021
7
March, 2020
Available data
142
bam
142
bigWig
98
tsv
44
bed narrowPeak
40
tagAlign
Organism
177
Homo sapiens
Biosample type
160
primary cell
13
tissue
4
cell line
Organ
16
pancreas
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3729
AMP
248
HPAP
177
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
169
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
2
2
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
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