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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
36
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
437
bam
419
bigWig
401
tsv
41
fastq
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
462
Homo sapiens
Biosample type
460
tissue
2
primary cell
1
in vitro differentiated cells
Organ
720
liver
652
pancreas
602
connective tissue
463
adipose tissue
317
epithelium
258
heart
179
brain
176
kidney
143
bone element
133
vasculature
129
blood vessel
78
artery
60
blood
60
bodily fluid
44
limb
41
musculature of body
33
embryo
25
eye
24
nerve
19
spleen
10
lung
10
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
463
AMP
Genome assembly (visualization)
419
GRCh38
418
hg19
Lab
463
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
February, 2023
target.investigated_as!
broad histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
463 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous adipose tissue
7
12
1
1
subcutaneous abdominal adipose tissue
16
3
omental fat pad
5
11
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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