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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
23
ATAC-seq
20
ChIP-seq
17
pCHi-C
16
snATAC-seq
Assay category
110
Transcription
39
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
Available data
120
bam
106
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
186
Homo sapiens
Biosample type
125
primary cell
34
tissue
27
in vitro differentiated cells
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
129
T1D
57
AMP
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
2965
AMP-T2D consortium
248
Klaus Kaestner, Upenn
186
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
February, 2023
target.investigated_as!
histone
BIOSAMPLE
ASSAY
186 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
17
See all biosamples
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