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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
583
ChIP-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
583
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
229
August, 2017
166
May, 2020
159
August, 2021
120
July, 2018
93
October, 2019
82
May, 2019
69
July, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
36
March, 2020
27
May, 2022
25
February, 2020
25
May, 2024
20
November, 2019
16
November, 2018
February, 2023
13
October, 2017
9
April, 2020
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1419
bam
1280
bigWig
1071
tsv
329
bed narrowPeak
308
fastq
269
bigBed narrowPeak
152
txt
128
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
22
bed bed3+
20
bed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1963
Homo sapiens
Biosample type
1969
tissue
609
primary cell
606
cell line
292
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
468
adipose tissue
386
pancreas
292
liver
208
heart
142
bone element
139
kidney
119
brain
72
blood vessel
72
vasculature
63
limb
39
musculature of body
32
nerve
26
artery
21
spleen
19
eye
10
lung
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1910
AMP
47
KPMP
9
LungMap
3
T1D
Genome assembly (visualization)
1273
GRCh38
1228
hg19
Lab
1792
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
target.investigated_as!
narrow histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1969 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
293
34
4
3
1
4
liver
167
103
1
3
1
1
1
1
kidney
49
17
64
1
1
bone element
84
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