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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
585
ChIP-seq
181
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
29
pCHi-C
27
WGBS
26
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1215
Transcription
585
DNA binding
389
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
630
histone modification
629
histone
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
48
December, 2017
47
September, 2023
42
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
Available data
1666
bam
1506
bigWig
1076
tsv
656
bed narrowPeak
453
bigBed narrowPeak
352
fastq
201
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
153
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2358
Homo sapiens
Biosample type
2358
tissue
885
primary cell
637
cell line
323
in vitro differentiated cells
9
stem cell
Organ
534
connective tissue
475
adipose tissue
455
pancreas
317
liver
289
kidney
239
heart
150
bone element
150
brain
107
limb
80
blood vessel
80
vasculature
73
musculature of body
35
nerve
32
artery
23
eye
23
spleen
20
lung
18
ureter
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2288
AMP
47
KPMP
19
LungMap
11
T1D
2
community
Genome assembly (visualization)
1575
GRCh38
1485
hg19
1
hg18
Lab
2046
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2367 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
293
34
57
1
4
5
3
1
1
4
adipose tissue
382
1
2
1
3
liver
167
103
20
2
1
1
3
1
1
1
kidney
49
17
75
13
64
6
1
1
1
bone element
84
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stem cell
hESC
2
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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