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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
921
total RNA-seq
391
ChIP-seq
173
single cell RNA-seq
168
DNase-seq
152
ATAC-seq
87
RNA microarray
26
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1110
Transcription
391
DNA binding
348
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
118
July, 2018
113
October, 2019
February, 2023
82
May, 2019
77
August, 2017
77
July, 2019
57
April, 2019
54
November, 2017
47
September, 2023
42
May, 2022
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
25
May, 2024
19
April, 2020
15
May, 2023
10
October, 2018
8
January, 2021
5
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1664
bam
1504
bigWig
1072
tsv
655
bed narrowPeak
453
bigBed narrowPeak
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
153
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2007
Homo sapiens
Biosample type
2009
tissue
592
primary cell
218
cell line
215
in vitro differentiated cells
6
stem cell
Organ
491
connective tissue
433
adipose tissue
289
kidney
259
pancreas
241
liver
239
heart
150
bone element
139
brain
107
limb
80
blood vessel
80
vasculature
71
musculature of body
35
nerve
32
artery
23
eye
20
lung
18
ureter
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1932
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1321
GRCh38
1217
hg19
Lab
1716
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
9
audit script error
month_released!
February, 2023
target.investigated_as!
narrow histone mark
files.file_type!
fastq
BIOSAMPLE
ASSAY
2009 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
1
islet of Langerhans
190
14
37
5
4
3
1
4
liver
167
41
1
20
1
2
1
1
kidney
49
17
64
13
75
6
1
1
1
bone element
84
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