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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
455
ChIP-seq
181
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
455
DNA binding
389
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
442
histone modification
441
histone
227
broad histone mark
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
195
August, 2017
163
June, 2019
143
May, 2020
120
July, 2018
104
October, 2019
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
19
April, 2020
15
May, 2023
9
November, 2017
9
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1664
bam
1504
bigWig
1072
tsv
655
bed narrowPeak
453
bigBed narrowPeak
349
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
153
txt
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2228
Homo sapiens
Biosample type
2230
tissue
832
primary cell
622
cell line
295
in vitro differentiated cells
9
stem cell
Organ
528
connective tissue
470
adipose tissue
445
pancreas
289
kidney
280
liver
239
heart
150
bone element
107
limb
86
brain
80
blood vessel
80
vasculature
63
musculature of body
35
nerve
32
artery
23
eye
23
spleen
20
lung
18
ureter
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2153
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1533
GRCh38
1460
hg19
Lab
1911
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
19
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2023
target.investigated_as!
narrow histone mark
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
2230 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
293
29
57
1
5
4
3
1
1
4
adipose tissue
382
1
2
3
1
liver
167
66
20
2
1
3
1
1
1
1
kidney
49
17
75
13
64
6
1
1
1
bone element
84
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