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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ATAC-seq
77
total RNA-seq
67
single cell RNA-seq
25
ChIP-seq
24
snATAC-seq
4
MeRIP-seq
3
Hi-C
1
pCHi-C
Assay category
144
Transcription
142
DNA accessibility
25
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
130
August, 2021
64
May, 2022
47
September, 2023
25
May, 2024
19
April, 2020
February, 2023
14
May, 2023
8
January, 2021
5
March, 2019
4
November, 2020
2
May, 2021
1
October, 2017
Available data
127
bed narrowPeak
64
xls
63
txt
46
bigWig
26
fastq
25
bam
2
bed broadPeak
2
hic
1
bedpe
1
bedpe bed3+
1
tsv
Organism
318
Homo sapiens
Biosample type
438
primary cell
319
tissue
41
in vitro differentiated cells
40
cell line
2
stem cell
Organ
189
kidney
45
pancreas
40
liver
25
heart
19
lung
1
thymus
Project
244
AMP
47
KPMP
19
LungMap
9
T1D
Genome assembly (visualization)
103
GRCh38
43
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
February, 2023
target.investigated_as!
narrow histone mark
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
319 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
75
49
58
6
1
islet of Langerhans
23
7
4
4
2
liver
20
20
left cardiac atrium
25
lung
9
10
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