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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
573
ChIP-seq
181
ATAC-seq
173
single cell RNA-seq
169
DNase-seq
87
RNA microarray
26
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1213
Transcription
573
DNA binding
379
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1638
bam
1481
bigWig
1072
tsv
638
bed narrowPeak
436
bigBed narrowPeak
323
fastq
190
bed bed3+
189
bed broadPeak
167
bigBed broadPeak
153
txt
128
tagAlign
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2325
Homo sapiens
Biosample type
2332
tissue
884
primary cell
576
cell line
323
in vitro differentiated cells
9
stem cell
Organ
532
connective tissue
474
adipose tissue
448
pancreas
310
liver
289
kidney
239
heart
150
bone element
148
brain
107
limb
80
blood vessel
80
vasculature
73
musculature of body
35
nerve
32
artery
23
eye
20
lung
18
ureter
14
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2255
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1551
GRCh38
1466
hg19
Lab
2013
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
November, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2332 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
293
34
57
1
5
4
3
1
4
1
adipose tissue
382
1
2
1
3
liver
167
99
20
1
1
3
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
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