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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1007
total RNA-seq
488
ChIP-seq
178
ATAC-seq
173
single cell RNA-seq
151
DNase-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1192
Transcription
488
DNA binding
358
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
narrow histone mark
162
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
138
June, 2019
120
July, 2018
101
October, 2019
February, 2023
66
July, 2019
66
May, 2022
64
May, 2019
63
October, 2018
57
April, 2019
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
36
March, 2020
25
May, 2024
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
October, 2017
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1540
bam
1405
bigWig
1049
tsv
566
bed narrowPeak
367
bigBed narrowPeak
338
fastq
172
bed bed3+
167
bed broadPeak
153
txt
149
bigBed broadPeak
64
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2201
Homo sapiens
Biosample type
2208
tissue
867
primary cell
637
cell line
323
in vitro differentiated cells
9
stem cell
Organ
533
connective tissue
475
adipose tissue
455
pancreas
317
liver
289
kidney
239
heart
150
bone element
brain
107
limb
80
blood vessel
80
vasculature
73
musculature of body
35
nerve
32
artery
23
eye
23
spleen
20
lung
18
ureter
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2131
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
1474
GRCh38
1430
hg19
Lab
1889
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
19
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
target.investigated_as!
narrow histone mark
organ_slims!
brain
BIOSAMPLE
ASSAY
2208 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
293
34
56
1
5
4
3
1
4
1
adipose tissue
382
1
2
3
1
liver
167
103
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
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