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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
171
total RNA-seq
149
ATAC-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
360
Transcription
207
DNA accessibility
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
February, 2023
77
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
18
August, 2017
12
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
506
bam
501
bigWig
293
fastq
258
tsv
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
694
Homo sapiens
Biosample type
1703
tissue
694
primary cell
251
cell line
233
in vitro differentiated cells
8
stem cell
Organ
262
epithelium
233
pancreas
22
connective tissue
15
vasculature
14
kidney
13
blood vessel
10
brain
8
blood
8
bodily fluid
8
liver
8
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
325
AMP
248
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
332
hg19
267
GRCh38
Lab
320
AMP-T2D consortium
248
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
23
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2023
target.investigated_as!
narrow histone mark
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
694 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
12
25
29
31
6
1
pancreatic beta cell
12
11
16
16
6
1
monocyte
54
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
1
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