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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
59
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
59
bam
59
fastq
54
bigWig
53
bed narrowPeak
53
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
60
cell line
8
primary cell
Organ
800
pancreas
716
liver
568
connective tissue
476
adipose tissue
381
epithelium
314
kidney
310
heart
156
brain
151
bone element
138
vasculature
133
blood vessel
83
musculature of body
78
artery
68
blood
68
bodily fluid
51
limb
23
spleen
20
lung
18
ureter
8
embryo
8
eye
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
60
AMP
8
T1D
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
60
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
February, 2023
October, 2019
target.investigated_as!
narrow histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
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