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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
492
DNA binding
193
Transcription
27
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
167
May, 2020
56
December, 2017
53
November, 2018
41
August, 2017
40
May, 2022
31
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
3
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
629
bam
568
bigWig
446
fastq
388
bed narrowPeak
342
bigBed narrowPeak
174
tsv
55
bed broadPeak
55
bigBed broadPeak
46
tagAlign
9
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
729
Homo sapiens
Biosample type
392
cell line
317
tissue
10
in vitro differentiated cells
10
primary cell
Organ
813
pancreas
729
liver
623
connective tissue
477
adipose tissue
405
epithelium
284
heart
259
kidney
168
vasculature
165
blood vessel
151
bone element
138
brain
98
artery
75
limb
68
blood
68
bodily fluid
44
musculature of body
35
nerve
29
embryo
23
spleen
21
eye
20
lung
16
vein
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
729
AMP
Genome assembly (visualization)
571
hg19
488
GRCh38
Lab
660
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2023
June, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
729 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
2
1
tissue
liver
103
167
20
3
2
1
1
1
1
1
right lobe of liver
8
3
1
1
2
2
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
2
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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