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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
pCHi-C
Assay category
DNA accessibility
23
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
March, 2020
Available data
25
bam
10
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
35
Homo sapiens
Biosample type
28
tissue
5
primary cell
2
cell line
Organ
194
pancreas
167
heart
165
liver
140
epithelium
135
kidney
109
brain
94
connective tissue
89
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
7
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
hg19
134
GRCh38
Lab
35
AMP-T2D consortium
month_released!
January, 2018
assembly!
hg19
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
endothelial cell of umbilical vein
5
cell line
smooth muscle cell of the coronary artery
2
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