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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
88
DNA binding
60
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
80
May, 2022
16
February, 2023
7
August, 2020
6
February, 2021
3
March, 2020
3
October, 2022
3
September, 2020
1
March, 2023
Available data
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
80
zippedFastqFolder
16
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
221
Homo sapiens
Biosample type
200
primary cell
14
tissue
7
cell line
Organ
114
pancreas
101
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
121
T1D
99
HPAP
1
ITG
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
117
Kyle Gaulton, UCSD
99
Klaus Kaestner, Upenn
4
AMP-T2D consortium
1
ITG
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
January, 2018
award.project!
AMP
assay_title!
snATAC-seq
assay_slims!
Transcription
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
CD4-positive, alpha-beta T cell
2
+ See 14 more…
tissue
islet of Langerhans
2
11
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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