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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
788
ChIP-seq
748
total RNA-seq
196
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
788
DNA binding
386
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
47
September, 2023
46
December, 2017
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
January, 2018
1
November, 2019
Available data
1476
bam
1395
bigWig
859
bed narrowPeak
801
tsv
497
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
162
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2266
Homo sapiens
Biosample type
2268
tissue
741
primary cell
539
cell line
384
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
pancreas
487
adipose tissue
359
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2201
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1471
GRCh38
1338
hg19
Lab
1979
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
25
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
January, 2018
target.investigated_as!
chromatin remodeller
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2268 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
2
1
3
liver
143
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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