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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
107
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
107
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
180
June, 2019
65
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3202
bam
3001
bigWig
1679
bed narrowPeak
1532
tsv
1342
fastq
954
bigBed narrowPeak
392
tagAlign
304
bed broadPeak
267
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
298
Homo sapiens
Biosample type
208
tissue
58
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
62
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
304
AMP
Genome assembly (visualization)
281
hg19
266
GRCh38
Lab
302
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
January, 2018
target.investigated_as!
other post-translational modification
organ_slims!
vasculature
BIOSAMPLE
ASSAY
304 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
57
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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