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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
409
DNA binding
28
DNA accessibility
Target of assay
325
transcription factor
81
histone modification
80
histone
78
recombinant protein
55
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
247
November, 2017
50
December, 2017
49
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
617
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
437
Homo sapiens
Biosample type
304
cell line
113
tissue
14
in vitro differentiated cells
6
primary cell
Organ
437
liver
212
pancreas
145
epithelium
141
brain
113
heart
112
kidney
97
vasculature
93
blood vessel
92
limb
74
connective tissue
60
musculature of body
54
blood
54
bodily fluid
39
artery
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
437
AMP
Genome assembly (visualization)
437
hg19
367
GRCh38
Lab
403
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2018
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
303
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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