Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
687
ChIP-seq
175
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
687
DNA binding
184
DNA accessibility
Target of assay
392
transcription factor
290
histone
290
histone modification
185
broad histone mark
105
narrow histone mark
81
recombinant protein
80
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
160
June, 2019
73
November, 2018
64
April, 2019
54
May, 2019
50
December, 2017
45
October, 2018
37
October, 2019
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2630
bam
2422
bigWig
1410
bed narrowPeak
1264
tsv
944
fastq
871
bigBed narrowPeak
292
tagAlign
268
bed broadPeak
231
bed bed3+
231
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
865
Homo sapiens
Biosample type
499
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
871
AMP
Genome assembly (visualization)
831
GRCh38
799
hg19
Lab
871
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
January, 2018
biosample_type!
primary cell
organ_slims!
vasculature
BIOSAMPLE
ASSAY
871 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 48 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
Download