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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
65
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
57
Homo sapiens
Biosample type
44
tissue
13
primary cell
Organ
925
pancreas
725
liver
672
connective tissue
496
epithelium
487
adipose tissue
356
heart
274
kidney
246
brain
215
vasculature
213
blood vessel
159
bone element
137
artery
86
limb
68
blood
68
bodily fluid
57
eye
57
musculature of body
41
nerve
36
embryo
23
spleen
19
lung
17
vein
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
57
AMP
Genome assembly (visualization)
35
hg19
18
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
January, 2018
March, 2020
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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