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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
7
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
65
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
90
Homo sapiens
Biosample type
76
tissue
14
primary cell
Organ
932
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
90
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
24
spleen
21
vein
19
lung
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
90
AMP
Genome assembly (visualization)
68
hg19
51
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
January, 2018
March, 2020
organ_slims!
ureter
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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