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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
174
DNA binding
8
Transcription
Target of assay
91
histone
91
histone modification
52
broad histone mark
48
transcription factor
39
narrow histone mark
35
control
8
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
178
bam
142
bigWig
137
bed narrowPeak
114
bigBed narrowPeak
94
fastq
15
bed bed3+
9
tsv
Organism
184
Homo sapiens
Biosample type
131
tissue
45
in vitro differentiated cells
5
primary cell
3
stem cell
Organ
68
liver
57
heart
26
kidney
25
epithelium
13
embryo
Project
184
AMP
Genome assembly (visualization)
147
hg19
146
GRCh38
Lab
184
AMP-T2D consortium
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
January, 2018
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
liver
38
heart left ventricle
35
kidney
23
1
heart right ventricle
13
right lobe of liver
10
+ See 3 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 2 more…
primary cell
hepatocyte
5
stem cell
hESC
3
See all biosamples
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