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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1708
ChIP-seq
1306
total RNA-seq
403
ATAC-seq
285
single cell RNA-seq
190
DNase-seq
84
snATAC-seq
48
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
14
RRBS
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
DNA methylation
Date released
8
July, 2019
6
August, 2017
Available data
12
bed bedMethyl
12
bigBed bedMethyl
4
fastq
Organism
14
Homo sapiens
Biosample type
11
tissue
3
primary cell
Organ
epithelium
5
musculature of body
3
kidney
2
brain
2
liver
2
pancreas
1
eye
1
heart
1
pericardium
1
vasculature
Project
14
AMP
Genome assembly (visualization)
12
hg19
Lab
14
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
January, 2018
organ_slims!
epithelium
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
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