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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
53
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
small RNA-seq
Assay category
150
DNA accessibility
117
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
17
October, 2019
14
May, 2023
8
February, 2021
3
July, 2019
2
December, 2019
2
March, 2020
Available data
160
bed narrowPeak
110
bam
100
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
15
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
314
Homo sapiens
Biosample type
297
tissue
17
cell line
Organ
774
liver
642
connective tissue
598
pancreas
486
adipose tissue
379
heart
317
kidney
261
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
epithelium
80
musculature of body
60
blood
60
bodily fluid
56
eye
43
nerve
36
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
267
AMP
47
KPMP
Genome assembly (visualization)
174
GRCh38
101
hg19
Lab
142
Katalin Susztak, Upenn
123
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
6
audit script error
month_released!
January, 2018
organ_slims!
epithelium
biosample_type!
primary cell
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
314 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
tissue
kidney
75
13
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
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