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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1703
ChIP-seq
1396
total RNA-seq
425
ATAC-seq
292
single cell RNA-seq
160
DNase-seq
86
RNA microarray
83
snATAC-seq
56
pCHi-C
27
WGBS
20
Hi-C
16
small RNA-seq
10
RRBS
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
160
DNA accessibility
Date released
140
June, 2019
9
November, 2018
5
August, 2017
5
October, 2019
1
November, 2020
Available data
159
bam
159
bed narrowPeak
159
bigBed narrowPeak
159
bigWig
157
bed broadPeak
157
bigBed broadPeak
155
bed bed3+
12
fastq
Organism
160
Homo sapiens
Biosample type
146
tissue
12
primary cell
1
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
160
AMP
Genome assembly (visualization)
157
GRCh38
142
hg19
Lab
160
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
January, 2018
organ_slims!
epithelium
musculature of body
BIOSAMPLE
ASSAY
160 results
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DNase-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 36 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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