Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
1
pCHi-C
Assay category
60
DNA binding
18
DNA accessibility
9
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
January, 2018
1
March, 2020
Available data
60
bam
60
fastq
54
bed narrowPeak
54
bigBed narrowPeak
54
bigWig
1
tsv
Organism
87
Homo sapiens
Biosample type
60
cell line
20
tissue
8
primary cell
Organ
946
pancreas
791
liver
683
connective tissue
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
61
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
88 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
cell line
GM12878
60
tissue
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
Download