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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
18
snATAC-seq
17
total RNA-seq
16
ATAC-seq
9
single cell RNA-seq
5
pCHi-C
3
DNase-seq
Assay category
62
DNA binding
37
DNA accessibility
26
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
3
histone
3
histone modification
3
narrow histone mark
Date released
27
December, 2018
21
October, 2019
19
April, 2020
18
January, 2019
17
February, 2023
15
November, 2018
8
January, 2021
3
June, 2019
1
February, 2020
January, 2018
1
March, 2020
Available data
72
bed narrowPeak
63
bam
60
fastq
57
bigBed narrowPeak
57
bigWig
4
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
62
tissue
60
cell line
8
primary cell
Organ
946
pancreas
791
liver
683
connective tissue
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
72
hg19
57
GRCh38
Lab
103
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
tissue
islet of Langerhans
2
14
1
4
retina
3
15
3
lung
10
9
1
cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
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