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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
15
total RNA-seq
1
RRBS
Assay category
22
DNA binding
15
Transcription
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
2
July, 2019
2
May, 2021
January, 2018
Available data
37
bam
29
bigWig
26
fastq
15
tsv
14
bed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
28
in vitro differentiated cells
8
cell line
1
primary cell
1
tissue
Organ
946
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
31
hg19
30
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
January, 2018
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
tissue
pericardium
1
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