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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
37
DNase-seq
12
total RNA-seq
8
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
46
DNA accessibility
15
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
10
October, 2019
6
February, 2021
5
March, 2020
4
August, 2017
4
February, 2020
2
May, 2022
January, 2018
Available data
56
bam
50
bigWig
45
bed narrowPeak
38
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
37
bigBed narrowPeak
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
74
Homo sapiens
Biosample type
70
tissue
4
primary cell
Organ
728
pancreas
530
connective tissue
417
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
56
musculature of body
20
lung
18
ureter
16
skeleton
14
embryo
8
blood
8
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
61
hg19
56
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
January, 2018
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
74 results
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DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
tibial nerve
2
5
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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