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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
18
DNA binding
6
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
17
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
114
bam
92
bed narrowPeak
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
32
tissue
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
January, 2018
files.file_type!
bigWig
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
pCHi-C
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
bladder (urinary bladder)
1
distal epiphysis of femur
1
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