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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
62
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
74
tissue
11
primary cell
Organ
940
pancreas
781
liver
665
connective tissue
511
epithelium
478
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
85
musculature of body
68
blood
68
bodily fluid
60
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
67
hg19
48
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
January, 2018
July, 2019
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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