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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
total RNA-seq
71
ChIP-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
RRBS
Assay category
298
Transcription
DNA accessibility
71
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
37
narrow histone mark
15
control
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
131
August, 2017
120
July, 2018
39
October, 2019
36
May, 2021
20
November, 2019
6
April, 2018
6
May, 2022
6
September, 2017
5
February, 2023
4
March, 2020
4
November, 2020
2
August, 2021
1
July, 2019
1
March, 2019
Available data
302
bam
295
bigWig
267
tsv
131
fastq
21
bed bed3+
20
bed narrowPeak
9
tagAlign
6
bed broadPeak
6
txt
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
Organism
381
Homo sapiens
Biosample type
381
tissue
Organ
342
pancreas
20
eye
4
gonad
4
ovary
1
connective tissue
1
limb
1
lymph node
Project
372
AMP
9
T1D
Genome assembly (visualization)
300
hg19
291
GRCh38
Lab
363
AMP-T2D consortium
11
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
10
missing controlled_by
month_released!
January, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
381 results
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total RNA-seq
ChIP-seq
MeRIP-seq
pCHi-C
Hi-C
RRBS
tissue
islet of Langerhans
298
71
4
4
3
1
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