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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
WGBS
1
pCHi-C
Assay category
88
DNA binding
12
Transcription
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
41
October, 2019
7
July, 2019
6
August, 2021
4
March, 2020
3
November, 2017
2
February, 2020
Available data
94
bam
76
bigWig
66
bed narrowPeak
66
bigBed narrowPeak
13
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
108
Homo sapiens
Biosample type
84
tissue
24
primary cell
Organ
773
pancreas
757
liver
650
connective tissue
483
adipose tissue
401
epithelium
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
42
blood
42
bodily fluid
40
nerve
37
embryo
29
eye
19
vein
16
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
78
hg19
71
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
January, 2019
assay_slims!
DNA accessibility
organ_slims!
heart
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial artery
23
1
aorta
13
4
1
1
2
1
ascending aorta
16
2
thoracic aorta
16
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
endothelial cell of hepatic sinusoid
1
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