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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
24
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
436
bam
417
bigWig
401
tsv
40
fastq
5
bed narrowPeak
5
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tagAlign
Organism
450
Homo sapiens
Biosample type
448
tissue
2
primary cell
1
in vitro differentiated cells
Organ
654
liver
622
pancreas
572
connective tissue
451
adipose tissue
308
epithelium
219
heart
161
kidney
147
bone element
107
vasculature
104
blood vessel
72
artery
62
brain
42
blood
42
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
16
nerve
16
spleen
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
451
AMP
Genome assembly (visualization)
418
GRCh38
416
hg19
Lab
451
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
January, 2019
assay_slims!
DNA accessibility
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
451 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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